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This is a list of notable custom software projects which have significantly failed to achieve some or all of their objectives, either temporarily or permanently, and/or have suffered from significant cost overruns. For a list of successful major custom software projects, see Custom software#Major project successes.

Note that failed projects, and projects running over budget, are not necessarily the sole fault of the employees or businesses creating the software. In some cases, problems may be due partly to problems with the purchasing organisation, including poor requirements, over-ambitious requirements, unnecessary requirements, poor contract drafting, poor contract management, poor end-user training, or poor operational management.

The Messinian Salinity Crisis (MSC), also referred to as the Messinian Event, and in its latest stage as the Lago Mare event, was a geological event during which the Mediterranean Sea went into a cycle of partly or nearly complete desiccation throughout the latter part of the Messinian age of the Miocene epoch, from 5.96 to 5.33 Ma (million years ago). It ended with the Zanclean flood, when the Atlantic reclaimed the basin.

Sediment samples from below the deep seafloor of the Mediterranean Sea, which include evaporite minerals, soils, and fossil plants, show that the precursor of the Strait of Gibraltar closed tight about 5.96 million years ago, sealing the Mediterranean off from the Atlantic. This resulted in a period of partial desiccation of the Mediterranean Sea, the first of several such periods during the late Miocene. After the strait closed for the last time around 5.6 Ma, the region's generally dry climate at the time dried the Mediterranean basin out nearly completely within a thousand years. This massive desiccation left a deep dry basin, reaching 3 to 5 km (1.9 to 3.1 mi) deep below normal sea level, with a few hypersaline pockets similar to today's Dead Sea. Then, around 5.5 Ma, less dry climatic conditions resulted in the basin receiving more freshwater from rivers, progressively filling and diluting the hypersaline lakes into larger pockets of brackish water (much like today's Caspian Sea). The Messinian Salinity Crisis ended with the Strait of Gibraltar finally reopening 5.33 Ma, when the Atlantic rapidly filled up the Mediterranean basin in what is known as the Zanclean flood.

Even today, the Mediterranean is considerably saltier than the North Atlantic, owing to its near isolation by the Strait of Gibraltar and its high rate of evaporation. If the Strait of Gibraltar closes again (which is likely to happen in the near future on a geological time scale), the Mediterranean would mostly evaporate in about a thousand years, after which continued northward movement of Africa may obliterate the Mediterranean altogether.

Only the inflow of Atlantic water maintains the present Mediterranean level. When that was shut off sometime between 6.5 to 6 MYBP, net evaporative loss set in at the rate of around 3,300 cubic kilometers yearly. At that rate, the 3.7 million cubic kilometres of water in the basin would dry up in scarcely more than a thousand years, leaving an extensive layer of salt some tens of meters thick and raising global sea level about 12 meters.

In economics, a negative income tax (NIT) is a welfare system within an income tax where people earning below a certain amount receive supplemental pay from the government instead of paying taxes to the government.

Such a system has been discussed by economists but never fully implemented. According to surveys however, the consensus view among economists is that the "government should restructure the welfare system along the lines" of one. It was described by British politician Juliet Rhys-Williams in the 1940s and later by American free-market economist Milton Friedman.

Negative income taxes can implement a basic income or supplement a guaranteed minimum income system.

In a negative income tax system, people earning a certain income level would owe no taxes; those earning more than that would pay a proportion of their income above that level; and those below that level would receive a payment of a proportion of their shortfall, which is the amount their income falls below that level.

A physical unclonable function (sometimes also called physically unclonable function, which refers to a weaker security metric), or PUF, is a physical object that for a given input and conditions (challenge), provides a physically-defined "digital fingerprint" output (response) that serves as a unique identifier, most often for a semiconductor device such as a microprocessor. PUFs are most often based on unique physical variations which occur naturally during semiconductor manufacturing. A PUF is a physical entity embodied in a physical structure. Today, PUFs are usually implemented in integrated circuits and are typically used in applications with high security requirements, more specifically cryptography.

The EURion constellation (also known as Omron rings or doughnuts) is a pattern of symbols incorporated into a number of banknote designs worldwide since about 1996. It is added to help imaging software detect the presence of a banknote in a digital image. Such software can then block the user from reproducing banknotes to prevent counterfeiting using colour photocopiers. According to research from 2004, the EURion constellation is used for colour photocopiers but probably not used in computer software. It has been reported that Adobe Photoshop will not allow editing of an image of a banknote, but in some versions this is believed to be due to a different, unknown digital watermark rather than the EURion constellation.

The BBC Domesday Project was a partnership between Acorn Computers, Philips, Logica and the BBC (with some funding from the European Commission's ESPRIT programme) to mark the 900th anniversary of the original Domesday Book, an 11th-century census of England. It has been cited as an example of digital obsolescence on account of the physical medium used for data storage.

This new multimedia edition of Domesday was compiled between 1984 and 1986 and published in 1986. It included a new "survey" of the United Kingdom, in which people, mostly school children, wrote about geography, history or social issues in their local area or just about their daily lives. Children from over 9,000 schools were involved. This was linked with maps, and many colour photos, statistical data, video and "virtual walks". Over 1 million people participated in the project. The project also incorporated professionally prepared video footage, virtual reality tours of major landmarks and other prepared datasets such as the 1981 census.

Portable soup was a kind of dehydrated food used in the 18th and 19th centuries. It was a precursor of meat extract and bouillon cubes, and of industrially dehydrated food. It is also known as pocket soup or veal glew. It is a cousin of the glace de viande of French cooking. It was long a staple of seamen and explorers, for it would keep for many months or even years. In this context, it was a filling and nutritious dish. Portable soup of less extended vintage was, according to the 1881 Household Cyclopedia, "exceedingly convenient for private families, for by putting one of the cakes in a saucepan with about a quart of water, and a little salt, a basin of good broth may be made in a few minutes."

Old Tjikko is a 9,550 year-old Norway Spruce, located on Fulufjället Mountain of Dalarna province in Sweden. Old Tjikko originally gained fame as the "world's oldest tree." Old Tjikko is, however, a clonal tree that has regenerated new trunks, branches and roots over millennia rather than an individual tree of great age. Old Tjikko is recognized as the oldest living Picea abies and the third oldest known clonal tree.

The age of the tree was determined by carbon dating of genetically matched plant material collected from under the tree, as dendrochronology would cause damage. The trunk itself is estimated to be only a few hundred years old, but the plant has survived for much longer due to a process known as layering (when a branch comes in contact with the ground, it sprouts a new root), or vegetative cloning (when the trunk dies but the root system is still alive, it may sprout a new trunk).

Magnetic shark repellents utilize permanent magnets, which exploit the sensitivity of the Ampullae of Lorenzini in sharks and rays (electrosense). This organ is not found on bony fish (teleosts), therefore, this type of shark repellent is selective to sharks and rays. Permanent magnets do not require power input, making them ideal for use in fisheries and as bycatch reduction devices. Sharkbanz, released in 2014, is a wearable commercially available device intended for recreational users.

Breeding back is a form of artificial selection by the deliberate selective breeding of domestic animals, in an attempt to achieve an animal breed with a phenotype that resembles a wild type ancestor, usually one that has gone extinct. Breeding back is not to be confused with dedomestication.

It must be kept in mind that a breeding-back breed may be very similar to the extinct wild type in phenotype, ecological niche, and to some extent genetics, but the original gene pool of that wild type was eliminated with its extinction. A breeding-back attempt cannot actually recreate the extinct wild type of the breeding target, as an extinct wild type cannot be resurrected through it. Furthermore, even the superficial authenticity of a bred-back animal depends on the quality of the stock used to breed the new lineage. As a result of this, some breeds, like Heck cattle, are at best a vague look-alike of the extinct wild type aurochs, according to the literature.